species:   Artha
pid:       MI0005443
parent:    ath-MIR866
paralog:   
locus:     5:16157823-16157948
matures:   ['UCAAGGAACGGAUUUUGUUAA', 'AACAAAAUCCGUCUUUGAAG']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:16157823-16157948

0 out of bounds
38 alignments
38 proper strand
31 stranded perfect matches

              ***********************                                                    **********************               
UCAUCUAUUCUUACUUUUCAAGGAACGGAUUUUGUUAACUAAAUGAUUCACACCCUUGAAGAAACACGAUCUCGUGUGAAUCAUUUCGUUAACAAAAUCCGUCUUUGAAGAGUAAGUAUAUUGUGA
((((.(((.(((((((((((((((.((((((((((((((.(((((((((((((..(((........)))....))))))))))))).))))))))))))))))))))))))))))).)))..))))
-----------------UCAAGGAACGGAUUUUGUUAA---------------------------------------------------------------------------------------- l=21 a=0 c
------------------------------------------------------------------------------------------AACAAAAUCCGUCUUUGAAG---------------- l=20 a=0 c*
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGAAGA--------------- l=20 a=23 ma
----------------UUCAAGGAACGGAUUUUGUUA----------------------------------------------------------------------------------------- l=21 a=5 ma*

-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGA------------------ l=17 a=1 
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGAAG---------------- l=19 a=1 
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGAAGA--------------- l=20 a=23 (ma)
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGuAGA--------------- l=20 a=1 
-------------------------------------------------------------------------------------------ACAAAgUCCGUCUUUGAAGA--------------- l=20 a=1 
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGAgGA--------------- l=20 a=1 
-------------------------------------------------------------------------------------------ACAAAAUCCGUCUUUGAAGg--------------- l=20 a=1 
-------------------------------------------------------------------------------------------ACAAAAUaCGUCUUUGAAGA--------------- l=20 a=1 
-----------------UCAAGGAACGGAUUUUGUU------------------------------------------------------------------------------------------ l=19 a=1 
-----------------UCAAGGAACGGAUUUUGUUu----------------------------------------------------------------------------------------- l=20 a=1 
----------------UUCAAGGAACGGAUUUUGcU------------------------------------------------------------------------------------------ l=20 a=1 
----------------UUCAAGGAACGGAUUUUGUUA----------------------------------------------------------------------------------------- l=21 a=5 (ma*)

mb-01111
ax-1111111
ku-01
ss-111111111111
fn-111
